Combine the cake flour, bread flour, baking soda, baking powder and coarse salt in a large bowl. Stir to combine and set aside.
In a large mixer add the butter and sugars and mix for 5 minutes until fluffy. Add the eggs, one at a time, making sure to scrape down the sides of the bowl in between. Add the vanilla and combine.
Add the dry ingredients a little at a time and mix until just combined. Fold in the chocolate chips.
Cover the dough and refrigerate dough for up to 72 hours.
When ready to bake, preheat oven to 350 degrees F. Scoop 1/4 cup sized cookie dough balls onto a parchment lined baking sheet and tuck a truffle in each cookie, making sure to seal it up with cookie dough, 6 cookies per sheet.
Bake the cookies for 16-20 minutes until golden brown.
Remove from oven and set aside to cool. Repeat with remaining dough